The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
Identifieur interne : 001179 ( Main/Exploration ); précédent : 001178; suivant : 001180The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
Auteurs : Pierre J. G. M. De Wit [Pays-Bas] ; Ate Van Der Burgt [Pays-Bas] ; Bilal Ökmen [Pays-Bas] ; Ioannis Stergiopoulos [Pays-Bas, États-Unis] ; Kamel A. Abd-Elsalam [Égypte] ; Andrea L. Aerts [États-Unis] ; Ali H. Bahkali [Arabie saoudite] ; Henriek G. Beenen [Pays-Bas] ; Pranav Chettri [Nouvelle-Zélande] ; Murray P. Cox [Nouvelle-Zélande] ; Erwin Datema [Pays-Bas] ; Ronald P. De Vries [Pays-Bas] ; Braham Dhillon [Canada] ; Austen R. Ganley [Nouvelle-Zélande] ; Scott A. Griffiths [Pays-Bas] ; Yanan Guo [Nouvelle-Zélande] ; Richard C. Hamelin [Canada] ; Bernard Henrissat [France] ; M. Shahjahan Kabir [Nouvelle-Zélande] ; Mansoor Karimi Jashni [Pays-Bas, Iran] ; Gert Kema [Pays-Bas] ; Sylvia Klaubauf [Pays-Bas] ; Alla Lapidus [États-Unis] ; Anthony Levasseur [France] ; Erika Lindquist [États-Unis] ; Rahim Mehrabi [Pays-Bas, Iran] ; Robin A. Ohm [États-Unis] ; Timothy J. Owen [Nouvelle-Zélande, Canada] ; Asaf Salamov [États-Unis] ; Arne Schwelm [Nouvelle-Zélande, Suède] ; Elio Schijlen [Pays-Bas] ; Hui Sun [États-Unis] ; Harrold A. Van Den Burg [Pays-Bas] ; Roeland C. H. J. Van Ham [Pays-Bas] ; Shuguang Zhang [Nouvelle-Zélande] ; Stephen B. Goodwin [États-Unis] ; Igor V. Grigoriev [États-Unis] ; Jérôme Collemare [Pays-Bas] ; Rosie E. Bradshaw [Nouvelle-Zélande]Source :
- PLoS Genetics [ 1553-7390 ] ; 2012.
Abstract
We sequenced and compared the genomes of the Dothideomycete fungal plant pathogens
Url:
DOI: 10.1371/journal.pgen.1003088
PubMed: 23209441
PubMed Central: 3510045
Affiliations:
- Arabie saoudite, Canada, France, Iran, Nouvelle-Zélande, Pays-Bas, Suède, Égypte, États-Unis
- Californie, Gueldre (province), Hollande-Septentrionale, Indiana, Pennsylvanie, Provence-Alpes-Côte d'Azur, Utrecht (province)
- Amsterdam, Marseille, Utrecht, Wageningue
- Université d'Aix-Marseille, Université de Wageningue
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 001094
- to stream Pmc, to step Curation: 001093
- to stream Pmc, to step Checkpoint: 000C08
- to stream Ncbi, to step Merge: 001163
- to stream Ncbi, to step Curation: 001163
- to stream Ncbi, to step Checkpoint: 001163
- to stream Main, to step Merge: 001191
- to stream Main, to step Curation: 001179
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Genomes of the Fungal Plant Pathogens <italic>Cladosporium fulvum</italic>
and <italic>Dothistroma septosporum</italic>
Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry</title>
<author><name sortKey="De Wit, Pierre J G M" sort="De Wit, Pierre J G M" uniqKey="De Wit P" first="Pierre J. G. M." last="De Wit">Pierre J. G. M. De Wit</name>
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<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
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<author><name sortKey="Van Der Burgt, Ate" sort="Van Der Burgt, Ate" uniqKey="Van Der Burgt A" first="Ate" last="Van Der Burgt">Ate Van Der Burgt</name>
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<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Laboratory of Bioinformatics, Wageningen University, Wageningen, The Netherlands</addr-line>
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<author><name sortKey="Okmen, Bilal" sort="Okmen, Bilal" uniqKey="Okmen B" first="Bilal" last="Ökmen">Bilal Ökmen</name>
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<author><name sortKey="Stergiopoulos, Ioannis" sort="Stergiopoulos, Ioannis" uniqKey="Stergiopoulos I" first="Ioannis" last="Stergiopoulos">Ioannis Stergiopoulos</name>
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<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
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<country xml:lang="fr">Pays-Bas</country>
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<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff4"><addr-line>Department of Plant Pathology, University of California Davis, Davis, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Pathology, University of California Davis, Davis, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Abd Elsalam, Kamel A" sort="Abd Elsalam, Kamel A" uniqKey="Abd Elsalam K" first="Kamel A." last="Abd-Elsalam">Kamel A. Abd-Elsalam</name>
<affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Agricultural Research Center, Plant Pathology Research Institute, Giza, Egypt</addr-line>
</nlm:aff>
<country xml:lang="fr">Égypte</country>
<wicri:regionArea>Agricultural Research Center, Plant Pathology Research Institute, Giza</wicri:regionArea>
<wicri:noRegion>Giza</wicri:noRegion>
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</author>
<author><name sortKey="Aerts, Andrea L" sort="Aerts, Andrea L" uniqKey="Aerts A" first="Andrea L." last="Aerts">Andrea L. Aerts</name>
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</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
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<author><name sortKey="Bahkali, Ali H" sort="Bahkali, Ali H" uniqKey="Bahkali A" first="Ali H." last="Bahkali">Ali H. Bahkali</name>
<affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>King Saud University, Riyadh, Saudi Arabia</addr-line>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>King Saud University, Riyadh</wicri:regionArea>
<wicri:noRegion>Riyadh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Beenen, Henriek G" sort="Beenen, Henriek G" uniqKey="Beenen H" first="Henriek G." last="Beenen">Henriek G. Beenen</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
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</affiliation>
</author>
<author><name sortKey="Chettri, Pranav" sort="Chettri, Pranav" uniqKey="Chettri P" first="Pranav" last="Chettri">Pranav Chettri</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cox, Murray P" sort="Cox, Murray P" uniqKey="Cox M" first="Murray P." last="Cox">Murray P. Cox</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Datema, Erwin" sort="Datema, Erwin" uniqKey="Datema E" first="Erwin" last="Datema">Erwin Datema</name>
<affiliation wicri:level="1"><nlm:aff id="aff9"><addr-line>Keygene N.V., Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Keygene N.V., Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff10"><addr-line>Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Applied Bioinformatics, Plant Research International, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="De Vries, Ronald P" sort="De Vries, Ronald P" uniqKey="De Vries R" first="Ronald P." last="De Vries">Ronald P. De Vries</name>
<affiliation wicri:level="3"><nlm:aff id="aff11"><addr-line>CBS–KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS–KNAW Fungal Biodiversity Centre, Utrecht</wicri:regionArea>
<placeName><settlement type="city">Utrecht</settlement>
<region nuts="2" type="province">Utrecht (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Dhillon, Braham" sort="Dhillon, Braham" uniqKey="Dhillon B" first="Braham" last="Dhillon">Braham Dhillon</name>
<affiliation wicri:level="1"><nlm:aff id="aff12"><addr-line>Department of Forest Sciences, University of British Columbia, Vancouver, Canada</addr-line>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Forest Sciences, University of British Columbia, Vancouver</wicri:regionArea>
<wicri:noRegion>Vancouver</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ganley, Austen R" sort="Ganley, Austen R" uniqKey="Ganley A" first="Austen R." last="Ganley">Austen R. Ganley</name>
<affiliation wicri:level="1"><nlm:aff id="aff13"><addr-line>Institute of Natural Sciences, Massey University, Albany, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Natural Sciences, Massey University, Albany</wicri:regionArea>
<wicri:noRegion>Albany</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Griffiths, Scott A" sort="Griffiths, Scott A" uniqKey="Griffiths S" first="Scott A." last="Griffiths">Scott A. Griffiths</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Guo, Yanan" sort="Guo, Yanan" uniqKey="Guo Y" first="Yanan" last="Guo">Yanan Guo</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C." last="Hamelin">Richard C. Hamelin</name>
<affiliation wicri:level="1"><nlm:aff id="aff12"><addr-line>Department of Forest Sciences, University of British Columbia, Vancouver, Canada</addr-line>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Forest Sciences, University of British Columbia, Vancouver</wicri:regionArea>
<wicri:noRegion>Vancouver</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name>
<affiliation wicri:level="1"><nlm:aff id="aff14"><addr-line>CNRS and Aix-Marseille Université, Marseille, France</addr-line>
</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>CNRS and Aix-Marseille Université, Marseille</wicri:regionArea>
<placeName><settlement type="city">Marseille</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kabir, M Shahjahan" sort="Kabir, M Shahjahan" uniqKey="Kabir M" first="M. Shahjahan" last="Kabir">M. Shahjahan Kabir</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jashni, Mansoor Karimi" sort="Jashni, Mansoor Karimi" uniqKey="Jashni M" first="Mansoor Karimi" last="Jashni">Mansoor Karimi Jashni</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff15"><addr-line>Department of Plant Pathology, Tarbiat Modares University, Tehran, Iran</addr-line>
</nlm:aff>
<country xml:lang="fr">Iran</country>
<wicri:regionArea>Department of Plant Pathology, Tarbiat Modares University, Tehran</wicri:regionArea>
<wicri:noRegion>Tehran</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kema, Gert" sort="Kema, Gert" uniqKey="Kema G" first="Gert" last="Kema">Gert Kema</name>
<affiliation wicri:level="1"><nlm:aff id="aff16"><addr-line>Department of Bio-Interactions, Plant Research International, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Department of Bio-Interactions, Plant Research International, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Klaubauf, Sylvia" sort="Klaubauf, Sylvia" uniqKey="Klaubauf S" first="Sylvia" last="Klaubauf">Sylvia Klaubauf</name>
<affiliation wicri:level="3"><nlm:aff id="aff11"><addr-line>CBS–KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS–KNAW Fungal Biodiversity Centre, Utrecht</wicri:regionArea>
<placeName><settlement type="city">Utrecht</settlement>
<region nuts="2" type="province">Utrecht (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff17"><addr-line>Cancer Genome Institute, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cancer Genome Institute, Fox Chase Cancer Center, Philadelphia, Pennsylvania</wicri:regionArea>
<placeName><region type="state">Pennsylvanie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Levasseur, Anthony" sort="Levasseur, Anthony" uniqKey="Levasseur A" first="Anthony" last="Levasseur">Anthony Levasseur</name>
<affiliation wicri:level="4"><nlm:aff id="aff18"><addr-line>INRA, Aix-Marseille Université, Marseille, France</addr-line>
</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, Aix-Marseille Université, Marseille</wicri:regionArea>
<placeName><settlement type="city">Marseille</settlement>
</placeName>
<orgName type="university">Université d'Aix-Marseille</orgName>
<placeName><settlement type="city">Marseille</settlement>
<region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mehrabi, Rahim" sort="Mehrabi, Rahim" uniqKey="Mehrabi R" first="Rahim" last="Mehrabi">Rahim Mehrabi</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff19"><addr-line>Department of Wheat Breeding, Seed and Plant Improvement Institute, Karaj, Iran</addr-line>
</nlm:aff>
<country xml:lang="fr">Iran</country>
<wicri:regionArea>Department of Wheat Breeding, Seed and Plant Improvement Institute, Karaj</wicri:regionArea>
<wicri:noRegion>Karaj</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ohm, Robin A" sort="Ohm, Robin A" uniqKey="Ohm R" first="Robin A." last="Ohm">Robin A. Ohm</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Owen, Timothy J" sort="Owen, Timothy J" uniqKey="Owen T" first="Timothy J." last="Owen">Timothy J. Owen</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff20"><addr-line>University of Northern British Columbia, Prince George, Canada</addr-line>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>University of Northern British Columbia, Prince George</wicri:regionArea>
<wicri:noRegion>Prince George</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name>
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</nlm:aff>
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</nlm:aff>
<country xml:lang="fr">Suède</country>
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</author>
<author><name sortKey="Schijlen, Elio" sort="Schijlen, Elio" uniqKey="Schijlen E" first="Elio" last="Schijlen">Elio Schijlen</name>
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</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</author>
<author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name>
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</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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</nlm:aff>
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</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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<affiliation wicri:level="3"><nlm:aff id="aff23"><addr-line>Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</affiliation>
</author>
<author><name sortKey="Van Ham, Roeland C H J" sort="Van Ham, Roeland C H J" uniqKey="Van Ham R" first="Roeland C. H. J." last="Van Ham">Roeland C. H. J. Van Ham</name>
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<affiliation wicri:level="1"><nlm:aff id="aff10"><addr-line>Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands</addr-line>
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<country xml:lang="fr">Pays-Bas</country>
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</author>
<author><name sortKey="Zhang, Shuguang" sort="Zhang, Shuguang" uniqKey="Zhang S" first="Shuguang" last="Zhang">Shuguang Zhang</name>
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</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
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</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff24"><addr-line>Industrial Research Limited, Lower Hutt, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
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</affiliation>
</author>
<author><name sortKey="Goodwin, Stephen B" sort="Goodwin, Stephen B" uniqKey="Goodwin S" first="Stephen B." last="Goodwin">Stephen B. Goodwin</name>
<affiliation wicri:level="2"><nlm:aff id="aff25"><addr-line>USDA–ARS/Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>USDA–ARS/Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana</wicri:regionArea>
<placeName><region type="state">Indiana</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V." last="Grigoriev">Igor V. Grigoriev</name>
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</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Collemare, Jerome" sort="Collemare, Jerome" uniqKey="Collemare J" first="Jérôme" last="Collemare">Jérôme Collemare</name>
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<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
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<author><name sortKey="Bradshaw, Rosie E" sort="Bradshaw, Rosie E" uniqKey="Bradshaw R" first="Rosie E." last="Bradshaw">Rosie E. Bradshaw</name>
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</nlm:aff>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The Genomes of the Fungal Plant Pathogens <italic>Cladosporium fulvum</italic>
and <italic>Dothistroma septosporum</italic>
Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry</title>
<author><name sortKey="De Wit, Pierre J G M" sort="De Wit, Pierre J G M" uniqKey="De Wit P" first="Pierre J. G. M." last="De Wit">Pierre J. G. M. De Wit</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Biosystems Genomics, Wageningen</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Van Der Burgt, Ate" sort="Van Der Burgt, Ate" uniqKey="Van Der Burgt A" first="Ate" last="Van Der Burgt">Ate Van Der Burgt</name>
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</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Laboratory of Bioinformatics, Wageningen University, Wageningen, The Netherlands</addr-line>
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<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Bioinformatics, Wageningen University, Wageningen</wicri:regionArea>
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</author>
<author><name sortKey="Okmen, Bilal" sort="Okmen, Bilal" uniqKey="Okmen B" first="Bilal" last="Ökmen">Bilal Ökmen</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</affiliation>
</author>
<author><name sortKey="Stergiopoulos, Ioannis" sort="Stergiopoulos, Ioannis" uniqKey="Stergiopoulos I" first="Ioannis" last="Stergiopoulos">Ioannis Stergiopoulos</name>
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</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
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</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
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<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Biosystems Genomics, Wageningen</wicri:regionArea>
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</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff4"><addr-line>Department of Plant Pathology, University of California Davis, Davis, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Pathology, University of California Davis, Davis, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Abd Elsalam, Kamel A" sort="Abd Elsalam, Kamel A" uniqKey="Abd Elsalam K" first="Kamel A." last="Abd-Elsalam">Kamel A. Abd-Elsalam</name>
<affiliation wicri:level="1"><nlm:aff id="aff5"><addr-line>Agricultural Research Center, Plant Pathology Research Institute, Giza, Egypt</addr-line>
</nlm:aff>
<country xml:lang="fr">Égypte</country>
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</author>
<author><name sortKey="Aerts, Andrea L" sort="Aerts, Andrea L" uniqKey="Aerts A" first="Andrea L." last="Aerts">Andrea L. Aerts</name>
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<country xml:lang="fr">États-Unis</country>
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</affiliation>
</author>
<author><name sortKey="Bahkali, Ali H" sort="Bahkali, Ali H" uniqKey="Bahkali A" first="Ali H." last="Bahkali">Ali H. Bahkali</name>
<affiliation wicri:level="1"><nlm:aff id="aff7"><addr-line>King Saud University, Riyadh, Saudi Arabia</addr-line>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>King Saud University, Riyadh</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Beenen, Henriek G" sort="Beenen, Henriek G" uniqKey="Beenen H" first="Henriek G." last="Beenen">Henriek G. Beenen</name>
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</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Chettri, Pranav" sort="Chettri, Pranav" uniqKey="Chettri P" first="Pranav" last="Chettri">Pranav Chettri</name>
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</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
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</author>
<author><name sortKey="Cox, Murray P" sort="Cox, Murray P" uniqKey="Cox M" first="Murray P." last="Cox">Murray P. Cox</name>
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</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
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</author>
<author><name sortKey="Datema, Erwin" sort="Datema, Erwin" uniqKey="Datema E" first="Erwin" last="Datema">Erwin Datema</name>
<affiliation wicri:level="1"><nlm:aff id="aff9"><addr-line>Keygene N.V., Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Keygene N.V., Wageningen</wicri:regionArea>
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</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff10"><addr-line>Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</affiliation>
</author>
<author><name sortKey="De Vries, Ronald P" sort="De Vries, Ronald P" uniqKey="De Vries R" first="Ronald P." last="De Vries">Ronald P. De Vries</name>
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</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Dhillon, Braham" sort="Dhillon, Braham" uniqKey="Dhillon B" first="Braham" last="Dhillon">Braham Dhillon</name>
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</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Forest Sciences, University of British Columbia, Vancouver</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Ganley, Austen R" sort="Ganley, Austen R" uniqKey="Ganley A" first="Austen R." last="Ganley">Austen R. Ganley</name>
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</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Natural Sciences, Massey University, Albany</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Griffiths, Scott A" sort="Griffiths, Scott A" uniqKey="Griffiths S" first="Scott A." last="Griffiths">Scott A. Griffiths</name>
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</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
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</affiliation>
</author>
<author><name sortKey="Guo, Yanan" sort="Guo, Yanan" uniqKey="Guo Y" first="Yanan" last="Guo">Yanan Guo</name>
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</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
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</author>
<author><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C." last="Hamelin">Richard C. Hamelin</name>
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</nlm:aff>
<country xml:lang="fr">Canada</country>
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</author>
<author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name>
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</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>CNRS and Aix-Marseille Université, Marseille</wicri:regionArea>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Kabir, M Shahjahan" sort="Kabir, M Shahjahan" uniqKey="Kabir M" first="M. Shahjahan" last="Kabir">M. Shahjahan Kabir</name>
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</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
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</affiliation>
</author>
<author><name sortKey="Jashni, Mansoor Karimi" sort="Jashni, Mansoor Karimi" uniqKey="Jashni M" first="Mansoor Karimi" last="Jashni">Mansoor Karimi Jashni</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff15"><addr-line>Department of Plant Pathology, Tarbiat Modares University, Tehran, Iran</addr-line>
</nlm:aff>
<country xml:lang="fr">Iran</country>
<wicri:regionArea>Department of Plant Pathology, Tarbiat Modares University, Tehran</wicri:regionArea>
<wicri:noRegion>Tehran</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kema, Gert" sort="Kema, Gert" uniqKey="Kema G" first="Gert" last="Kema">Gert Kema</name>
<affiliation wicri:level="1"><nlm:aff id="aff16"><addr-line>Department of Bio-Interactions, Plant Research International, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Department of Bio-Interactions, Plant Research International, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Klaubauf, Sylvia" sort="Klaubauf, Sylvia" uniqKey="Klaubauf S" first="Sylvia" last="Klaubauf">Sylvia Klaubauf</name>
<affiliation wicri:level="3"><nlm:aff id="aff11"><addr-line>CBS–KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>CBS–KNAW Fungal Biodiversity Centre, Utrecht</wicri:regionArea>
<placeName><settlement type="city">Utrecht</settlement>
<region nuts="2" type="province">Utrecht (province)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lapidus, Alla" sort="Lapidus, Alla" uniqKey="Lapidus A" first="Alla" last="Lapidus">Alla Lapidus</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff17"><addr-line>Cancer Genome Institute, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cancer Genome Institute, Fox Chase Cancer Center, Philadelphia, Pennsylvania</wicri:regionArea>
<placeName><region type="state">Pennsylvanie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Levasseur, Anthony" sort="Levasseur, Anthony" uniqKey="Levasseur A" first="Anthony" last="Levasseur">Anthony Levasseur</name>
<affiliation wicri:level="4"><nlm:aff id="aff18"><addr-line>INRA, Aix-Marseille Université, Marseille, France</addr-line>
</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>INRA, Aix-Marseille Université, Marseille</wicri:regionArea>
<placeName><settlement type="city">Marseille</settlement>
</placeName>
<orgName type="university">Université d'Aix-Marseille</orgName>
<placeName><settlement type="city">Marseille</settlement>
<region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mehrabi, Rahim" sort="Mehrabi, Rahim" uniqKey="Mehrabi R" first="Rahim" last="Mehrabi">Rahim Mehrabi</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff19"><addr-line>Department of Wheat Breeding, Seed and Plant Improvement Institute, Karaj, Iran</addr-line>
</nlm:aff>
<country xml:lang="fr">Iran</country>
<wicri:regionArea>Department of Wheat Breeding, Seed and Plant Improvement Institute, Karaj</wicri:regionArea>
<wicri:noRegion>Karaj</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ohm, Robin A" sort="Ohm, Robin A" uniqKey="Ohm R" first="Robin A." last="Ohm">Robin A. Ohm</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Owen, Timothy J" sort="Owen, Timothy J" uniqKey="Owen T" first="Timothy J." last="Owen">Timothy J. Owen</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff20"><addr-line>University of Northern British Columbia, Prince George, Canada</addr-line>
</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>University of Northern British Columbia, Prince George</wicri:regionArea>
<wicri:noRegion>Prince George</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Salamov, Asaf" sort="Salamov, Asaf" uniqKey="Salamov A" first="Asaf" last="Salamov">Asaf Salamov</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Schwelm, Arne" sort="Schwelm, Arne" uniqKey="Schwelm A" first="Arne" last="Schwelm">Arne Schwelm</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff21"><addr-line>Department of Plant Biology and Forest Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden</addr-line>
</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea>Department of Plant Biology and Forest Genetics, Swedish University of Agricultural Sciences, Uppsala</wicri:regionArea>
<wicri:noRegion>Uppsala</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Schijlen, Elio" sort="Schijlen, Elio" uniqKey="Schijlen E" first="Elio" last="Schijlen">Elio Schijlen</name>
<affiliation wicri:level="1"><nlm:aff id="aff22"><addr-line>Department of Bioscience, Plant Research International, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Department of Bioscience, Plant Research International, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Sun, Hui" sort="Sun, Hui" uniqKey="Sun H" first="Hui" last="Sun">Hui Sun</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Van Den Burg, Harrold A" sort="Van Den Burg, Harrold A" uniqKey="Van Den Burg H" first="Harrold A." last="Van Den Burg">Harrold A. Van Den Burg</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Biosystems Genomics, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff23"><addr-line>Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam</wicri:regionArea>
<placeName><settlement type="city">Amsterdam</settlement>
<region nuts="2" type="province">Hollande-Septentrionale</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Van Ham, Roeland C H J" sort="Van Ham, Roeland C H J" uniqKey="Van Ham R" first="Roeland C. H. J." last="Van Ham">Roeland C. H. J. Van Ham</name>
<affiliation wicri:level="1"><nlm:aff id="aff9"><addr-line>Keygene N.V., Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Keygene N.V., Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff10"><addr-line>Applied Bioinformatics, Plant Research International, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Applied Bioinformatics, Plant Research International, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Shuguang" sort="Zhang, Shuguang" uniqKey="Zhang S" first="Shuguang" last="Zhang">Shuguang Zhang</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff24"><addr-line>Industrial Research Limited, Lower Hutt, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Industrial Research Limited, Lower Hutt</wicri:regionArea>
<wicri:noRegion>Lower Hutt</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Goodwin, Stephen B" sort="Goodwin, Stephen B" uniqKey="Goodwin S" first="Stephen B." last="Goodwin">Stephen B. Goodwin</name>
<affiliation wicri:level="2"><nlm:aff id="aff25"><addr-line>USDA–ARS/Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>USDA–ARS/Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana</wicri:regionArea>
<placeName><region type="state">Indiana</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V." last="Grigoriev">Igor V. Grigoriev</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>U.S. Department of Energy Joint Genome Institute, Walnut Creek, California</wicri:regionArea>
<placeName><region type="state">Californie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Collemare, Jerome" sort="Collemare, Jerome" uniqKey="Collemare J" first="Jérôme" last="Collemare">Jérôme Collemare</name>
<affiliation wicri:level="4"><nlm:aff id="aff1"><addr-line>Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Laboratory of Phytopathology, Wageningen University, Wageningen</wicri:regionArea>
<orgName type="university">Université de Wageningue</orgName>
<placeName><settlement type="city">Wageningue</settlement>
<region nuts="2">Gueldre (province)</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Centre for Biosystems Genomics, Wageningen, The Netherlands</addr-line>
</nlm:aff>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Biosystems Genomics, Wageningen</wicri:regionArea>
<wicri:noRegion>Wageningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bradshaw, Rosie E" sort="Bradshaw, Rosie E" uniqKey="Bradshaw R" first="Rosie E." last="Bradshaw">Rosie E. Bradshaw</name>
<affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand</addr-line>
</nlm:aff>
<country xml:lang="fr">Nouvelle-Zélande</country>
<wicri:regionArea>Institute of Molecular BioSciences, Massey University, Palmerston North</wicri:regionArea>
<wicri:noRegion>Palmerston North</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS Genetics</title>
<idno type="ISSN">1553-7390</idno>
<idno type="eISSN">1553-7404</idno>
<imprint><date when="2012">2012</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>We sequenced and compared the genomes of the Dothideomycete fungal plant pathogens <italic>Cladosporium fulvum (Cfu)</italic>
(syn. <italic>Passalora fulva</italic>
) and <italic>Dothistroma septosporum (Dse)</italic>
that are closely related phylogenetically, but have different lifestyles and hosts. Although both fungi grow extracellularly in close contact with host mesophyll cells, <italic>Cfu</italic>
is a biotroph infecting tomato, while <italic>Dse</italic>
is a hemibiotroph infecting pine. The genomes of these fungi have a similar set of genes (70% of gene content in both genomes are homologs), but differ significantly in size (<italic>Cfu</italic>
>61.1-Mb; <italic>Dse</italic>
31.2-Mb), which is mainly due to the difference in repeat content (47.2% in <italic>Cfu</italic>
versus 3.2% in <italic>Dse</italic>
). Recent adaptation to different lifestyles and hosts is suggested by diverged sets of genes. <italic>Cfu</italic>
contains an α-tomatinase gene that we predict might be required for detoxification of tomatine, while this gene is absent in <italic>Dse</italic>
. Many genes encoding secreted proteins are unique to each species and the repeat-rich areas in <italic>Cfu</italic>
are enriched for these species-specific genes. In contrast, conserved genes suggest common host ancestry. Homologs of <italic>Cfu</italic>
effector genes, including <italic>Ecp2</italic>
and <italic>Avr4</italic>
, are present in <italic>Dse</italic>
and induce a Cf-Ecp2- and Cf-4-mediated hypersensitive response, respectively. Strikingly, genes involved in production of the toxin dothistromin, a likely virulence factor for <italic>Dse</italic>
, are conserved in <italic>Cfu</italic>
, but their expression differs markedly with essentially no expression by <italic>Cfu in planta</italic>
. Likewise, <italic>Cfu</italic>
has a carbohydrate-degrading enzyme catalog that is more similar to that of necrotrophs or hemibiotrophs and a larger pectinolytic gene arsenal than <italic>Dse</italic>
, but many of these genes are not expressed <italic>in planta</italic>
or are pseudogenized. Overall, comparison of their genomes suggests that these closely related plant pathogens had a common ancestral host but since adapted to different hosts and lifestyles by a combination of differentiated gene content, pseudogenization, and gene regulation.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Van Kan, Jal" uniqKey="Van Kan J">JAL van Kan</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Thomma, Bphj" uniqKey="Thomma B">BPHJ Thomma</name>
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<author><name sortKey="Crous, Pw" uniqKey="Crous P">PW Crous</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Goodwin, Sb" uniqKey="Goodwin S">SB Goodwin</name>
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</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bradshaw, Re" uniqKey="Bradshaw R">RE Bradshaw</name>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Barnes, I" uniqKey="Barnes I">I Barnes</name>
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<author><name sortKey="Wingfield, Bd" uniqKey="Wingfield B">BD Wingfield</name>
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<biblStruct><analytic><author><name sortKey="Jenkins, Ja" uniqKey="Jenkins J">JA Jenkins</name>
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<biblStruct><analytic><author><name sortKey="Bednarova, M" uniqKey="Bednarova M">M Bednarova</name>
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<author><name sortKey="Palovcikova, D" uniqKey="Palovcikova D">D Palovcikova</name>
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</biblStruct>
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</biblStruct>
<biblStruct><analytic><author><name sortKey="Woods, Aj" uniqKey="Woods A">AJ Woods</name>
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</biblStruct>
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<author><name sortKey="Peterson, D" uniqKey="Peterson D">D Peterson</name>
</author>
<author><name sortKey="Peterson, N" uniqKey="Peterson N">N Peterson</name>
</author>
<author><name sortKey="Stecher, G" uniqKey="Stecher G">G Stecher</name>
</author>
<author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name>
</author>
</analytic>
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<author><name sortKey="Pedersen, Ag" uniqKey="Pedersen A">AG Pedersen</name>
</author>
</analytic>
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</author>
<author><name sortKey="Procter, Jb" uniqKey="Procter J">JB Procter</name>
</author>
<author><name sortKey="Martin, Dma" uniqKey="Martin D">DMA Martin</name>
</author>
<author><name sortKey="Clamp, M" uniqKey="Clamp M">M Clamp</name>
</author>
<author><name sortKey="Barton, Gj" uniqKey="Barton G">GJ Barton</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z Zhang</name>
</author>
<author><name sortKey="Li, J" uniqKey="Li J">J Li</name>
</author>
<author><name sortKey="Zhao, Xq" uniqKey="Zhao X">XQ Zhao</name>
</author>
<author><name sortKey="Wang, J" uniqKey="Wang J">J Wang</name>
</author>
<author><name sortKey="Wong, Gk" uniqKey="Wong G">GK Wong</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name>
</author>
<author><name sortKey="Gojobori, T" uniqKey="Gojobori T">T Gojobori</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Chettri, P" uniqKey="Chettri P">P Chettri</name>
</author>
<author><name sortKey="Calvo, Am" uniqKey="Calvo A">AM Calvo</name>
</author>
<author><name sortKey="Cary, Jw" uniqKey="Cary J">JW Cary</name>
</author>
<author><name sortKey="Dhingra, S" uniqKey="Dhingra S">S Dhingra</name>
</author>
<author><name sortKey="Guo, Ya" uniqKey="Guo Y">YA Guo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gamborg, Ol" uniqKey="Gamborg O">OL Gamborg</name>
</author>
<author><name sortKey="Miller, Ra" uniqKey="Miller R">RA Miller</name>
</author>
<author><name sortKey="Ojima, K" uniqKey="Ojima K">K Ojima</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Van Esse, Hp" uniqKey="Van Esse H">HP van Esse</name>
</author>
<author><name sortKey="Van T Klooster, Jw" uniqKey="Van T Klooster J">JW Van 't Klooster</name>
</author>
<author><name sortKey="Bolton, Md" uniqKey="Bolton M">MD Bolton</name>
</author>
<author><name sortKey="Yadeta, Ka" uniqKey="Yadeta K">KA Yadeta</name>
</author>
<author><name sortKey="Van Baarlen, P" uniqKey="Van Baarlen P">P van Baarlen</name>
</author>
</analytic>
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</author>
<author><name sortKey="Nijveen, H" uniqKey="Nijveen H">H Nijveen</name>
</author>
<author><name sortKey="Rao, X" uniqKey="Rao X">X Rao</name>
</author>
<author><name sortKey="Bisseling, T" uniqKey="Bisseling T">T Bisseling</name>
</author>
<author><name sortKey="Geurts, R" uniqKey="Geurts R">R Geurts</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Livak, Kj" uniqKey="Livak K">KJ Livak</name>
</author>
<author><name sortKey="Schmittgen, Td" uniqKey="Schmittgen T">TD Schmittgen</name>
</author>
</analytic>
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<li>Canada</li>
<li>France</li>
<li>Iran</li>
<li>Nouvelle-Zélande</li>
<li>Pays-Bas</li>
<li>Suède</li>
<li>Égypte</li>
<li>États-Unis</li>
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<region><li>Californie</li>
<li>Gueldre (province)</li>
<li>Hollande-Septentrionale</li>
<li>Indiana</li>
<li>Pennsylvanie</li>
<li>Provence-Alpes-Côte d'Azur</li>
<li>Utrecht (province)</li>
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<settlement><li>Amsterdam</li>
<li>Marseille</li>
<li>Utrecht</li>
<li>Wageningue</li>
</settlement>
<orgName><li>Université d'Aix-Marseille</li>
<li>Université de Wageningue</li>
</orgName>
</list>
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<name sortKey="De Vries, Ronald P" sort="De Vries, Ronald P" uniqKey="De Vries R" first="Ronald P." last="De Vries">Ronald P. De Vries</name>
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<country name="Suède"><noRegion><name sortKey="Schwelm, Arne" sort="Schwelm, Arne" uniqKey="Schwelm A" first="Arne" last="Schwelm">Arne Schwelm</name>
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